The international Aquarius/SAC-D satellite was successfully launched yesterday (thankfully!). Media coverage was good – except for the almost absolute avoidance of the term ‘salinity’ to describe the concentration of salts in the surface ocean that Aquarius will retrieve – oh well. But what is Aquarius going to see, and why is it important?
[Read more…] about The age of Aquarius
Unfinished Business
A paper in the scientific literature has to have some minimum level of content to be worth publishing (and regrettably, the search for the ‘Least Publishable Unit’ (LPU) of work is occasionally apparent for those wishing to pad their CVs). But what happens when someone has something worth saying that falls below that level? This is might be an update to an earlier paper, with modifications to figure, one extra sensitivity test, or some other minor addition, that could be of interest to readers of the original, but it doesn’t really get to the point where one would write a whole new paper. Some new journals (such as Geoscientific Model Development, GMD) have set up mechanisms to provide versioning of papers so that small updates can be made relatively easily, but this is rather uncommon.
A common reason to want to add additional material is in the light of subsequent commentary. In the usual case of an official submitted comment, the required response provides a good opportunity to give further details, add justification, or even agree with the comment (this last one doesn’t happen very often, but it does occur). Comments are often hard to publish for all sorts of non-scientific reasons, see Rick Trebino’s appalling story for instance, and note GRL’s 2010 decision to stop accepting comments altogether. Unfortunately not all comment/response pairs that do get published are worthwhile, but I still think they can be useful.
Where criticism occurs on a blog, there is no necessity to respond (as there would be for a submitted comment), but it is possible that there is something worth addressing (not everything is of course). Responses posted to that material – either in blog comments or in other blogs are however a little unsatisfying since the blog commentary and response are not tied to the actual paper (though mechanisms like that used by ‘Research Blogging‘ or JournalTalk could conceivably be used), and can quite frequently spiral out of control (with additional criticisms, responses, and often vast amounts of irrelevant commentary). As a useful archive of a discussion, this leaves much to be desired, nonetheless, the determined reader can usually find some nuggets.
But there is a third case where the comment/response effectively never sees the light of day. For a number of reasons critics will sometimes decide not to submit a comment, but rather a whole new paper. This might be because they want to include more information than a comment would allow or are making a comment on a previous work as part of a larger paper. Or it might be that they (correctly) note that comments are not as useful on the CV as a ‘proper’ paper, or indeed, a journal does not want to accept a comment for some reason. Less nobly, comments are sometimes avoided to try to prevent the original authors from having the last word. However, there is a risk that this paper never gets published at all (perhaps because it has less than one LPU, or it isn’t very good, or it clearly nothing more than a comment on a previous paper, or the authors lose enthusiasm). In that case, the criticism, and any response to it from the original authors (if they were asked to respond), simply disappears from sight. While possible, in my experience it is very rare that the critics then turn back to the official comment route.
It is very unusual for any scientific paper to the last word on anything, and there are almost always things that, in retrospect, one would have done differently. So it is not surprising that questions get raised through all this that the original authors might want to tackle without themselves submitting a whole other paper. Theoretically most papers would benefit from a well-refereed post-publication commentary. Yet, without a formal mechanism to shepherd this process, this material generally falls through the cracks.
As readers might have surmised, this is leading up to something.
Two papers that I was an author or co-author on in recent years generated a fair amount of blog commentary – Schmidt (2009) in IJoC and Benestad and Schmidt (2009) in JGR – mostly because they were explorations of issues raised by authors critical of the mainstream view of climate science. Despite the blog discussions, however, in neither case was a comment/response pair published. A comment was submitted on Schmidt (2009) by Jos de Laat, but this did not pass peer review (rightly I think) and no more has been heard of it. In both cases however, other authors whose work was criticised (specifically Ross McKitrick and Nicola Scafetta) submitted new papers to the same journal that were effectively just extended comments. A couple of valid points were made, but much in the draft texts was either wrong or irrelevant. I was asked to respond to both submissions by the editors involved, and did so in the form of a signed draft response as if the papers had indeed been submitted as comments. In both cases however, the papers were eventually rejected. A similar paper by McKitrick and Nierenberg appeared in another journal, while Scafetta’s paper has not been seen again.
So why bring this up now?
The fact is well-crafted comments and responses on both these papers would have been a useful contribution to the literature, and it is a shame that this didn’t happen (as I stated in at least one of the responses). That the authors were unwilling to submit ‘just’ a comment for whatever reason is part of the story (but it is not clear that any actual comment would have stuck to the points I thought worth making, or that the comment/response would have passed peer review either). But both papers have been mentioned recently in various contexts and it was apparent that the conversations might have been at least a little more interesting if the at least some of the unpublished correspondence on the papers had been available.
It strikes me that these are unlikely to be unique circumstances (or at least I would be very surprised if this kind of thing hasn’t happened to other people). So is there interest in RC providing space for these kinds of discussions? Authors, with something extra to say that they don’t ever think they’ll put in a new paper, could add some extra analysis and tie up some of the loose ends. I’d be happy to start the ball rolling by dealing with some issues relating to the papers mentioned above, but is this something else anyone would care to do? Should we instead be advocating for a rapid reaction online journal specifically for worthwhile comments and replies, especially since some journals have stopped accepting them? Thoughts welcome.
Steve Schneider’s first letter to the editor
There was a time at NASA when writing a letter to the paper without your director’s permission could get you fired. And no, I’m not talking about the last Bush administration.
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Fracking methane
The Howarth et al paper estimating the climatic impact of shale gas extraction by hydraulic fracturing (fracking) has provoked a number of responses across the media. Since the issue of natural gas vs. coal or oil, and the specifics of fracking itself are established and growing public issues, most commentary has served to bolster any particular commenter’s prior position on some aspect of this. So far, so unsurprising. However, one aspect of the Howarth study uses work that I’ve been involved in to better estimate the indirect effects of short-lived emissions (including methane, the dominant component of shale gas). Seeing how this specific piece of science is being brought into a policy debate is rather interesting.
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The warm beer chart
Perhaps a way to connect with Joe Sixpack?
Tagline: If we can pay as much attention to the Earth as we do to our beer, we probably wouldn’t need to worry about global warming.
Design by S. Han, loosely based on IPCC (2007), courtesy of the “Artist as Citizen” initiative. (Full size pdf version)
Under and over the ice
I really like the fact that there is still so much to discover about important parts of the climate system. The Bell et al paper in Science Express this week (final version in Science) reporting on the surprising results from airborne ground-penetrating radar studies of the Antarctic Ice Sheet is a great example. The ice sheets themselves are the biggest challenge for climate modelling since we don’t have direct evidence of the many of the key processes that occur at the ice sheet base (for obvious reasons), nor even of what the topography or conditions are at the base itself. And of course, the future fate of the ice sheets and how they will dynamically respond to climate warming is hugely important for projections of sea level rise and polar hydrology. The fact that ice sheets will respond to warming is not in doubt (note the 4-6 m sea level rise during the last interglacial), but the speed at which that might happen is highly uncertain, though the other story this week shows it is ongoing.
Wahl-to-Wahl coverage
Eugene Wahl asked us to post a statement related to some incorrect claims circulating in the blogosphere:
The Daily Caller blog yesterday contained an inaccurate story regarding a correspondence that was part of the emails hacked from East Anglia University Climate Research Unit (CRU) in November 2009.
For the record, while I received the email from CRU as forwarded by Dr. Mann, the forwarded message came without any additional comment from Dr. Mann; there was no request from him to delete emails. At the time of the email in May 2008, I was employed by Alfred University, New York. I became a NOAA employee in August 2008.
The emails I deleted while a university employee are the correspondence I had with Dr. Briffa of CRU regarding the Fourth Assessment Report of the Intergovernmental Panel on Climate Change, all of which have been in the public domain since the CRU hack in November 2009. This correspondence has been extensively examined and no misconduct found. As a NOAA employee, I follow agency record retention policies and associated guidance from information technology staff.
Dr. Eugene R. Wahl
March 9, 2011
Further questions can be addressed to Katy.G.Human -at- noaa.gov
Our comments
These claims are simply the latest attempt to try and manufacture scandals and smear scientists, particularly Mike Mann, based on the UEA emails. The story appears likely to have come from Senator Inhofe’s office who presumably had access to the transcripts taken by the NOAA Office of the Inspector General (whose investigation found no evidence of any wrongdoing by NOAA employees). The story was planted with Steve McIntyre, Anthony Watts, and Chris Horner, and then linked to by Inhofe’s office to provide a little plausible denialability – a rather blatant media spin operation.
But the facts of the case do not support the narrative they are pushing at all. While Jones’ original email was certainly ill-advised (as we stated immediately it came to light in Nov. 2009). Eugene Wahl was not subject to FOIA at the time (since he was not a federal employee) and was not subject to UK FOI anyway since he was working for a US-based university. Nor was he aware of any ongoing FOI actions in any case. In the original emails released, Mann stated that he would notify Wahl of Jones’ email, and his only involvement was to forward the Jones email to Wahl which Wahl’s account confirms.
So what is the actual issue at the heart of this? A single line in the IPCC AR4 report (p466) which correctly stated that “Wahl and Ammann (2006) also show that the impact [of the McIntyre and McKitirck critique] on the amplitude of the final reconstruction [by MBH98] was small (~0.05C)”. This was (and remains) true. During the drafting Keith Briffa corresponded with Eugene Wahl and others to ensure that the final text was accurate (which it was). Claims from McIntyre that this was not allowed under IPCC rules are just bogus – IPCC authors can consult with anyone they like at any time. However, this single line, whose inclusion made no effective difference to the IPCC presentation, nonetheless has driven continuing harassment of everyone involved for no good purpose whatsoever. Wahl and Ammann did show that MM05 made no substantial difference to the MBH reconstruction, whether it got said in the IPCC report or not.
That this inconvenient fact has driven hundreds of blog posts, dozens of fevered accusations, a basket load of FOI requests, and stoked multiple fires of manufactured outrage is far more a testimony to personal obsession, rather than to its intrinsic importance. The science of paleo-reconstructions has moved well beyond this issue, as has the interest of the general public in such minutiae. We can however expect the usual suspects to continue banging this drum, long after everyone else has gone home.
Live-blogging the climate science hearings
I will be live-blogging the House Energy and Commerce committee hearings on climate science with Eli Kintisch. The details are available here, and there should be a live feed from the committee website from 10am.
Eli and I did this last year for the last Democrat-run hearings, and it went quite well – a little like a play-by-play from Eli and some background analysis/cites from me. People can ask questions and comment in real time and depending on how busy it gets, they might get a response.
As usual, this hearing will likely be long on political grandstanding and short on informed discussion, but there might be some gems. Of the witnesses, John Christy and Roger Pielke Sr. are the main witnesses for the majority side, while Richard Somerville, Francis Zwiers and Chris Field are the Dem invitees. There is newcomer to the roster (at least to me), in Knute Nadelhoffer, who presumably will discuss climate change impacts on biological systems (but I don’t really know). There is one out-of-left-field witness, Donald Roberts, who is a serially wrong DDT advocate who is probably there in order to dismiss environmental regulation in general, following the well-worn strategy described in Oreskes and Conway’s “Merchants of Doubt” (Chapter 7 on the revisionist attacks on Rachel Carson) (NB. DDT-related arguments are off topic for this blog, but for background of the specifics of the DDT ‘meme’ see this summary, and interested commenters are encouraged to go to Deltoid).
Anyway, for those who are aficionados of science as contact sport (TM, Steve Schneider), it might be fun.
Update: This was also live-blogged at ClimateCentral and twittered by UCS.
Glory (not to) be
This morning one of the most important (and most delayed) satellite launches in ages took place. The mission was to launch the Glory satellite into a polar orbit, where three key instruments would have been looking at solar irradiance, aerosols and clouds. Unfortunately, one of the stages failed to separate and the satellite did not make orbit.
The irradiance measurements were to be an important continuation of the SORCE mission results, and are needed to stably continue the Total Solar Irradiance (TSI) timeseries. However the big new measurements were those associated with the Aerosol Polarimeter Sensor (APS). A similar instrument has flown in space twice before (the French-developed POLDER instrument), but unfortunately only for short periods. Its uniqueness lies in its ability to detect aerosols over bright surfaces (like land), and more importantly, to distinguish what kind of aerosols it is seeing. (Update: There is a third POLDER instrument, PARASOL, that is currently in orbit, see comments).
It may seem surprising, but despite many different attempts, almost all remote sensing of aerosols from space is only capable of detecting the total optical depth of all aerosols. MISR can provide some discrimination in special cases (picking out dust via a retrieval of non-spherical particles, or using the single scattering albedo to distinguish black carbon), but overall the estimates mix up sulphates, dust, black carbon, sea salt, nitrates and secondary organics. These originate from different processes, have different properties and different impacts on both radiation and clouds. Sea salt comes from sea spray over the oceans, dust from dry desert areas, black carbon from burning of forests and fossil fuels, sulphates derive from ocean plankton and burning coal, nitrates derive from fertiliser use, car exhausts and lightning, and secondary organics come from the stew of volatile organic compounds from industrial and natural sources alike. There are also pollen, and fat particles from outdoor cooking etc.
Because we can’t easily distinguish what’s what from space, we don’t have good global coverage of exactly how much of the aerosol is anthropogenic, and how much is natural. That uncertainty is a big player in the overall uncertainty in the human caused aerosol radiative forcing. Similarly, we have not been able to tell how much of the aerosol is capable of interacting with liquid or ice clouds (which depends on the different aerosols’ affinity for water), and that impacts our assessment of the aerosol indirect effect. These uncertainties are reflected in the model simulations of aerosol concentrations which all show similar total amounts, but have very different partitions among the different types.
The APS technology is a big step forward on these issues. It turns out that while the reflected SW from many different aerosols is similar, the polarisation of that reflected light depends quite strongly on what kind of aerosol it is. This varies depending on the angle at which the light is shining, So by scanning through the angles and measuring the polarisation, we can get a better constraint on the distribution of key aerosols. Scientists have already been working with aircraft mounted versions of the instrument, and this will continue.
The story of how this launch actually happened is very long and twisted, and needless to say, has taken far longer than anyone envisaged at the start (over a decade ago). With the failure to make orbit this morning, the wait will unfortunately go on.
This is of course a huge setback for the mission team (many of whom I know), and I can only imagine how frustrating this must be. The loss of OCO two years ago was due to a similar problem, though 3 launches since then have been successful (and the same system is being replicated as OCO-2). With the postponement of CLARREO in the proposed 2012 budget, there is a huge hole building in the US contribution to Earth and Sun observing systems.
Working from space is hard, expensive and risky. We cannot take it for granted, and yet we need that information more than ever.
Requiem for the Younger Dryas impact hypothesis?
This is the strong conclusion of a new paper in the Earth Science Reviews by Pinter et al (via Scribd). From their abstract:
The Younger Dryas (YD) impact hypothesis is a recent theory that suggests that a cometary or meteoritic body or bodies hit and/or exploded over North America 12,900 years ago, causing the YD climate episode, extinction of Pleistocene megafauna, demise of the Clovis archaeological culture, and a range of other effects.
…
The physical evidence interpreted as signatures of an impact event can be separated into two groups. The first group consists of evidence that has been largely rejected by the scientific community and is no longer in widespread discussion…. The second group consists of evidence that has been active in recent research and discussions:…. Over time, however, these signatures have also seen contrary evidence rather than support.
…
In summary, none of the original YD impact signatures have been subsequently corroborated by independent tests. Of the 12 original lines of evidence, seven have so far proven to be non-reproducible. The remaining signatures instead seem to represent either (1) non-catastrophic mechanisms, and/or (2) terrestrial rather than extraterrestrial or impact-related sources.
The YD impact hypothesis made a big splash at AGU in 2007, and we’ve written about it a few times since. Our assessment was (in 2007), that this would need a lot of confirmatory evidence to get accepted, and even if it was, it did not provide much explanation for other, very similar, abrupt changes in the record. In 2009, we were still skeptical and noted that “the level of proof required for this extraordinary idea will need to be extraordinarily strong”. Unfortunately, as this paper makes clear, neither a lot of confirmatory evidence nor extraordinarily strong proofs have been forthcoming.
This paper is unlikely to the very last word on the subject, but it is likely to be the last time the mainstream paleo-climatologists are going to pay this much heed unless some really big new piece of evidence comes to light.
However, while the specifics of this particular hypothesis and its refutation are interesting in many ways…
The YD impact hypothesis provides a cautionary tale for researchers, the scientific community, the press, and the broader public.
Let’s be specific…
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